PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00920.1_g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 233aa    MW: 25574.1 Da    PI: 4.6235
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00920.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-193383155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +gy+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa++ ++g
  Rsa1.0_00920.1_g00013.1 33 PGYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDAAALTIKG 83
                             79*****998.**********843...6**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.30E-233393No hitNo description
PfamPF008474.9E-133383IPR001471AP2/ERF domain
PROSITE profilePS5103223.2483491IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-223492IPR016177DNA-binding domain
SMARTSM003801.6E-353497IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-323592IPR001471AP2/ERF domain
PRINTSPR003677.8E-113546IPR001471AP2/ERF domain
PRINTSPR003677.8E-115773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MTESYISSVK QPSPVEHEET HRTNSKKRVR PDPGYRGVRM RTWGKWVSEI REPRKKSRIW  60
LGTFSTAEMA ARAHDAAALT IKGASAVLNF PELATFLPRP ASSSPRDVQA AAAVAAAMDF  120
SSSSVATSDP TTVVPETQLS SSSSYSTSAS SSSPSSEEAA SSTPEELAEI VELPSLETSY  180
NELWNEFVYV DPTYPPSSPW YFNNCYSFYY NSDESGTSMA EPFESSNFCP LFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-163591360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-163591663ATERF1
3gcc_A2e-163591663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00245DAPTransfer from AT1G77200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471905.11e-111PREDICTED: ethylene-responsive transcription factor ERF037
RefseqXP_013713254.11e-111PREDICTED: ethylene-responsive transcription factor ERF037-like
SwissprotO806541e-103ERF37_ARATH; Ethylene-responsive transcription factor ERF037
TrEMBLA0A078DEA11e-108A0A078DEA1_BRANA; BnaA07g33380D protein
STRINGBra015686.1-P1e-103(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77200.14e-73ERF family protein